Scaffold Ga0311301

Basic Information
Taxon OID	3300032160 Open in IMG/M
Scaffold ID	Ga0311301_10001875 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly (MetaSPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032160 Open in IMG/M

Scaffold ID

Ga0311301_10001875 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly (MetaSPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	80170
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (80.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

80170

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (80.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005307	Metagenome / Metatranscriptome	405	Y
F005675	Metagenome / Metatranscriptome	393	Y
F013877	Metagenome / Metatranscriptome	267	Y
F068027	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_100018751	F068027	AGG	MIKQVLLLLLLGAPLACASDYFVDCNYGSNGNPGTGTQQAWRTLLQVGISSFQPGDTINLRRDCTWNETLTPPSSGNSDSLIKIDSYGNGQPAHLTGYLPIAAQWWTQVGSTNVWSATLYSATSGLANVVQCGIRGFYCLTQPPSQLQYVRFGTVWGTAQGNQAALSQDRDFWYDSTNYMLYVYSASGNPAAHYATVAPIVLSGESVLNVNGVSWMEIQHLQIDWFDGYGVQVQGGSDHLWLANLAADSQVENGAVPLGFYVQPTGKPVDIHLYNTDANMNYAGYHFDGCSSGGCAFEIKNCRAYANRAYGIVDNVQGAVSYDYCYLYANNLATALTVDTSGTPGPTAGTHNIAAETPPWIREWHRWPGYTTVSYDDPGLVQYSDTYISSLLPV
Ga0311301_1000187534	F005675	GAGG	MWIRESERNVHWNWTVIFSYAASLALSLAIWGGLFRAVEHLVK
Ga0311301_1000187577	F005307	GGA	MDRGTAVRAALMAGVLGVFIQMIPLLGIVLTGALAVFFYRRESRIVLPTALGSRLGGAAGVAAFAINALLITIRIFVFHAQQEYIDFLTRFAHTVGANAADPDFQAGIHSLLTPSGLAITFLFGMIIAAVLASVGGALASLFLRPRNPRA
Ga0311301_100018759	F013877	GAGG	MKFISEMVGQEIHVELKYCERCGGLWLRPQGSDGVYCVGCRAHLEAMPNPGEPPARKARLRRRVRAQKEGTNIQKDVQGEDLRNPARIESLEGVAAMEVQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0311301_10001875

Overview

Ecosystem & Geography

Associated Families

Sequences