Basic Information | |
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Taxon OID | 3300032159 Open in IMG/M |
Scaffold ID | Ga0268251_10103292 Open in IMG/M |
Source Dataset Name | Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1019 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Guanajuato, Mexico | |||||||
Coordinates | Lat. (o) | 21.7658 | Long. (o) | -100.163 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001183 | Metagenome / Metatranscriptome | 755 | Y |
F003179 | Metagenome | 503 | Y |
F055487 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0268251_101032921 | F055487 | GGAG | MAEQIPEAWIGQEVTVYFGLEGYRQPGILESVSERGIVVKSGQEGAEEHVFWYPHTSVLRLMRGRPRGAEVRSF |
Ga0268251_101032922 | F003179 | GAG | MAYLIEQAALLGDEHTAFDGVGDQHPHGYASYFFTRRAVKLLEG |
Ga0268251_101032923 | F001183 | N/A | KRQLIRELVRKKTGLDWPELQVADIEKAMSSVTLFYWCKKEEVGKRWLQKQLELTDEEAESIIGANRSVGRPTRDMNH |
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