NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10083439

Scaffold Ga0268251_10083439


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10083439 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007998Metagenome / Metatranscriptome341Y
F042770Metagenome / Metatranscriptome157Y
F051741Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100834392F007998GAGGMFTSLIAKVVTAVCALVGAIALLGTFFMTLTGRLPYVESGLALIFFAMFLVGSYWWTVFGPGRGL
Ga0268251_100834393F042770GGAGGVERFLDRVVLGAKTIMTRVELGGTLFVAAVIGVLLTSREE
Ga0268251_100834394F051741N/APKDYSSYEGVLEPEGPGVWFDPEVGNDPRWQNRWKSTERVQLRITSTRIVFLRRGGGSSQAATR

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