NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268251_10027274

Scaffold Ga0268251_10027274


Overview

Basic Information
Taxon OID3300032159 Open in IMG/M
Scaffold IDGa0268251_10027274 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1745
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000230Metagenome / Metatranscriptome1517Y
F014785Metagenome / Metatranscriptome260Y
F104242Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0268251_100272741F000230AGGAGMSEQAGKIKRKAIPEWAEGLYYNSGMFHEVLVYHDDESLYIEHKGKEDGIVRFTFEMIEGLKRVEEEEESTDLPQ
Ga0268251_100272743F014785AGGAGMVATLYCPCGQAHELWGEFWWTEGRYQWIFFDYEETSETYAEQVENCPACGRLLERKNLL
Ga0268251_100272744F104242N/ARRSEQRKRDAALRYELEIESRKVGWGDPALIYDEEKDLFRFRDGRFAFSREHADWELLRKRDRMKGL

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