Scaffold Ga0268251_10002119

Overview

Basic Information

• Taxon OID: 3300032159
• Scaffold ID: Ga0268251_10002119
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012810	Metagenome / Metatranscriptome	277	Y
F051741	Metagenome / Metatranscriptome	143	Y
F061539	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268251_100021196	F061539	AGAAG	MHLASDYIHPTPRARRCRMRIYLPEEEQDASVVICSELPNNGGTSVTYAAEQLAAEVIRSHKLPTPLVWIEHWPKEATDGEEETFESVVFTSYKVEERAPYLGKARAWIGDATWKRLDRATVEVLVGEKV
Ga0268251_100021197	F012810	GAG	VGSGLLLAAGFFVGVVLRNVLLGVLLFALGAILFAVRGYLNTGDKAVAGALIFVSLVAIGIEAIVYFIGP
Ga0268251_100021198	F051741	N/A	YEGVLEPEGPGVWFDPEISNDPRWQKGWNSTERVELRITPTRIVLLRRGGARGPAATR