Scaffold Ga0268251_10000007

Overview

Basic Information

• Taxon OID: 3300032159
• Scaffold ID: Ga0268251_10000007
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 328409
• Total Scaffold Genes: 318
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 237 (74.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002582	Metagenome / Metatranscriptome	546	Y
F024633	Metagenome / Metatranscriptome	205	Y
F047346	Metagenome / Metatranscriptome	150	Y
F077272	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0268251_1000000711	F024633	GGA	VARKTIFVSDFSQKEIPDDKQSVQVVLRYADGRRGQIVADGHVDDDVVKQIARVGKQQARRGRRPKESQ
Ga0268251_10000007162	F047346	GGAG	MGRFVGRENVRKRLATLEGEQGRTIYADGAARLELPDVRVGA
Ga0268251_10000007239	F077272	N/A	VTRAAFAIAGLLFALVPRGHDFTVSEAQRAFRNHTGLPLVRFAAASTAEVTSLRTRPHNTRRFGEFQLFVLKPSRVRQLRRVFTHGTRADRRGVHWVPDQAGGWIAVSLHRRNLVLAWFAPSPSRTTDARWTRLRRAVAAFAPPV
Ga0268251_10000007293	F002582	GGGGG	MLVCLFQLRAAQTLAEAVPWGRVAGKTAKAFPVAILGLFGTGAYMTSDVWTWSTGWIDVSIAGLVVLALQGPLVAEHTAKKLQGALRENGPGPLGRHALRMARHPGLWIVDLSNLGVVLGVVWDMTQKAGTASSIAAVVGGYLVGAAVALPFTRLPAEELAPATETAS