Scaffold Ga0315295_10332465

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315295_10332465

Scaffold Ga0315295_10332465

Overview

Basic Information
Taxon OID	3300032156 Open in IMG/M
Scaffold ID	Ga0315295_10332465 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1542
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5367	Long. (^o)	-110.4246	Alt. (m)		Depth (m)	13
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011580	Metagenome	289	Y
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315295_103324651	F011580	AGG	MTQSQALTQALILALIAPNDEKATQASDLAESIAQGLDFDQVEQCKANALLILE
Ga0315295_103324653	F088497	GAGG	MNDKLEWQALWDAMEANPAEWIPTTEAMYWEMLEAVPPRAQKKTAFLVGEADHDNAEGYPVYSAFKRVGDNFYAKSMTFAQFTGEFVT

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