Scaffold Ga0315295_10054271

Overview

Basic Information

• Taxon OID: 3300032156
• Scaffold ID: Ga0315295_10054271
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3770
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5367
  • Long. (^o): -110.4246
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002794	Metagenome / Metatranscriptome	529	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315295_100542716	F002794	GGAG	MSEGVAWNQGELSEETRRMVLDQAMQTNHTMALVGLMNEIMANNTNPHASIIRRLRTMKNSLSLNDPMPLYDVTTLDLAIKALEAHS
Ga0315295_100542718	F001872	N/A	VAIAKAKAGIPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKNPKAGRKEALIFIDTLVANANELGLQCILDYFPEPHGRAWRCDRYAWLKYDKATIHGAPKGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA