Scaffold Ga0315295_10018326

Overview

Basic Information

• Taxon OID: 3300032156
• Scaffold ID: Ga0315295_10018326
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6204
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5367
  • Long. (^o): -110.4246
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F003659	Metagenome / Metatranscriptome	474	Y
F005775	Metagenome	390	N
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315295_100183261	F005775	N/A	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNAGKLDTVVTKELDTYTTHHLKNLLNTNEQP
Ga0315295_1001832613	F011474	GGA	MKEKIDHLTHYDIVVKEELASCTSADEMLHVLAKNYDLRKPLGGITKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS
Ga0315295_1001832615	F051646	N/A	MVGLFYIYLPMSWSIPQQIEKDIIAGKAKYQTFQTGNGGQSILPVPPNSYAVIFGYDFSPAGGGFTFTDQRFLGTQDEPDAVRFFQTQQISFYTGTDFFPFIHHVNTQNNISSDPINPAILNHCYTIDNTPLSRQVYITSTNDVAITHGLILTATVATTGLIPVTSRTPGFLTYGGSAQLIQAQTNYGPGATPQQFMQPSPKDFQDFALGLLPGNPTDQAFATPDAVNGLIEANVFLASLAANFPRQAASNYYLCLHYAIYSKTIPEQRG
Ga0315295_1001832616	F000710	N/A	GIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVVAHELGASVNGGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0315295_100183264	F008615	N/A	MNTPNTFGAKMFGRFISKGWHISFTDSYQDRVCVIPPKRLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPTFEASAHPDDIERFAAFATWIGDLLRNPQKFL
Ga0315295_100183269	F003659	N/A	MPLIASQVVGRYLITREDVPVYNFPNGTRIGTIAKGNSTAEVYSFVQRPGQVWFMFDYTIPGQTPGAYYVLDKEGRFSLSNAPGNVIVSPNELPGVDVFPAGSQLKTFALYGIIGLLAILLLKK