NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315295_10006411

Scaffold Ga0315295_10006411


Overview

Basic Information
Taxon OID3300032156 Open in IMG/M
Scaffold IDGa0315295_10006411 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10049
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5367Long. (o)-110.4246Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F011474Metagenome / Metatranscriptome290N
F031077Metagenome / Metatranscriptome183Y
F051646Metagenome143Y
F070805Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0315295_100064111F031077N/APLSNVGANGNQFQVNEALLVEKIGFFVPLAANGIAYSGIGLAGLSVKFDLVIGNKTVIKDASCEFGGEQAFYNDGAAASSVIDLEGAGILIPPQVEYFVVAKTYFGFSRVASSQRLGCYLFGTGALLNFNTTI
Ga0315295_1000641120F070805N/AMYLQLAGHTPLHNAENPLAPGAPTYSYDKFYLGESQDIILPDALYKTSPGGFVDALKKLKKLFQDFQDGKKPTPAVVAARAATAQMPTTGVQRASTIQPLNGVIFAAVIGLLTQAIPYIVSILGSFTATVVNNSITNKYQQNAYNVQNLNRMNVSELNLQIQSLDRDIAGINRFNFIQLMALSQFRMVYQQRFDRISGFGLLSNLPGWVLPAALGVGAYLLLRRK
Ga0315295_1000641124F002259N/AMGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFVPLAANGIAYSGIGLAGLSVKFDLVIGNKTVIKDASCEFGGEQAFYNDGAAASSVIDLEGAGILIPPQVEYFV
Ga0315295_100064113F000710N/AMANNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0315295_100064114F051646N/AMSWQIPTQVELDIIAGKAKYQTFQTGNGGQSILQVPPNSFVVIFGYDFSPAGGGIRIGSNATVPTELSPEDIRWFETQQISFYTGTDFYPFIHHVNSEHSARINTVLNNDDYTIDTTPIARQVYITSNNDVAITHGLILNAIPATSGVIPVTSRTPGFLTYGGSGQAVQAQTNYGPGGTPLQFMQPSPKDFQDFALGLLPGNADNQAFATPDVTNGLLAANIHLLNIGGDPFVQAAAANYYLCMHYAIYSKTIPEQRP
Ga0315295_100064116F011474GGAMKEKIDHLTHFDIVVKEELASCTSADEMLHVLSKNYDLRKPLGGITKAAFTIGLRTAVGMLRPEVKANFNYKAKELKETRFPHLKIFR

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