Basic Information | |
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Taxon OID | 3300032156 Open in IMG/M |
Scaffold ID | Ga0315295_10006411 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10049 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.17%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5367 | Long. (o) | -110.4246 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000710 | Metagenome / Metatranscriptome | 925 | Y |
F002259 | Metagenome / Metatranscriptome | 577 | Y |
F011474 | Metagenome / Metatranscriptome | 290 | N |
F031077 | Metagenome / Metatranscriptome | 183 | Y |
F051646 | Metagenome | 143 | Y |
F070805 | Metagenome | 122 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315295_100064111 | F031077 | N/A | PLSNVGANGNQFQVNEALLVEKIGFFVPLAANGIAYSGIGLAGLSVKFDLVIGNKTVIKDASCEFGGEQAFYNDGAAASSVIDLEGAGILIPPQVEYFVVAKTYFGFSRVASSQRLGCYLFGTGALLNFNTTI |
Ga0315295_1000641120 | F070805 | N/A | MYLQLAGHTPLHNAENPLAPGAPTYSYDKFYLGESQDIILPDALYKTSPGGFVDALKKLKKLFQDFQDGKKPTPAVVAARAATAQMPTTGVQRASTIQPLNGVIFAAVIGLLTQAIPYIVSILGSFTATVVNNSITNKYQQNAYNVQNLNRMNVSELNLQIQSLDRDIAGINRFNFIQLMALSQFRMVYQQRFDRISGFGLLSNLPGWVLPAALGVGAYLLLRRK |
Ga0315295_1000641124 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFVPLAANGIAYSGIGLAGLSVKFDLVIGNKTVIKDASCEFGGEQAFYNDGAAASSVIDLEGAGILIPPQVEYFV |
Ga0315295_100064113 | F000710 | N/A | MANNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
Ga0315295_100064114 | F051646 | N/A | MSWQIPTQVELDIIAGKAKYQTFQTGNGGQSILQVPPNSFVVIFGYDFSPAGGGIRIGSNATVPTELSPEDIRWFETQQISFYTGTDFYPFIHHVNSEHSARINTVLNNDDYTIDTTPIARQVYITSNNDVAITHGLILNAIPATSGVIPVTSRTPGFLTYGGSGQAVQAQTNYGPGGTPLQFMQPSPKDFQDFALGLLPGNADNQAFATPDVTNGLLAANIHLLNIGGDPFVQAAAANYYLCMHYAIYSKTIPEQRP |
Ga0315295_100064116 | F011474 | GGA | MKEKIDHLTHFDIVVKEELASCTSADEMLHVLSKNYDLRKPLGGITKAAFTIGLRTAVGMLRPEVKANFNYKAKELKETRFPHLKIFR |
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