NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315303_1128459

Scaffold Ga0315303_1128459


Overview

Basic Information
Taxon OID3300032146 Open in IMG/M
Scaffold IDGa0315303_1128459 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_Tmax_316 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)370
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F090485Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315303_11284591F090485GAGGVSDVSDLEIGKLIQKVDSLEVMVREQNNRLDKLDQQLERTRGIGIGVV
Ga0315303_11284592F003515N/AVKALLLAALLILSPVVNAGPPEGMVKQMIPFPAMCLPATVEKHHFAALMGALIADYGVHISMTFSASQDQSKRVAIIENPATGLAGVLMIMDEQTCIAFSGEDRKVYIRPPNHPVGTENEAPKT

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