Scaffold Ga0315304_1109195

Overview

Basic Information

• Taxon OID: 3300032145
• Scaffold ID: Ga0315304_1109195
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_1000m_313 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 730
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089010	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315304_11091951	F089010	AGGAGG	MPDLYHGKTEFEPALLTGQSARLHLNATEAHDVRVVSWGYLPSHRHDFGELTAGTASLAQDCTHIDMPDGEFAQYRFKIVDPSVEIELKHPASTQQWAVQGYSTSTGANWRQRYWSTDDPEDVQKWMFKSSEFFVFEQNTPRFDLYPETGLSGASTPQGYVEFFGFRYALQRLPEGERGMVDIWAQGWPGGRL