Scaffold Ga0315910_10186910

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315910_10186910

Scaffold Ga0315910_10186910

Overview

Basic Information
Taxon OID	3300032144 Open in IMG/M
Scaffold ID	Ga0315910_10186910 Open in IMG/M
Source Dataset Name	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1551
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.0136	Long. (^o)	-118.4673	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060684	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_101869102	F060684	GGA	MPLALLLLVVVAVVVWKLNGTGQQFLPAFARLMDGAQIQAGPTSLFTGLSYATGQFHGREVAIRLQLRRGRYQTGYLVVAMRTNGPQNLDPSGVDSQTRDDAGRRALFTIASNELLLLVEDGWLKTMWKPIGFTIFPGAFSEEKWRPVLEAMHTVAESLEA

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