Scaffold Ga0315910_10000020

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000020
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 387925
• Total Scaffold Genes: 369
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (13.28%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002819	Metagenome / Metatranscriptome	528	Y
F012121	Metagenome	283	Y
F015187	Metagenome / Metatranscriptome	256	Y
F099531	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_1000002015	F012121	N/A	MGNYHLERWIYKTVVGFLLVAGGIFLMYYSLSHFMRDDWILYGSICSASVGGGVYFLSSGAVNKVKADMIKKQKIKQQSG
Ga0315910_10000020153	F002819	N/A	MPTTTCEISGDVYQLDYTKLNSKRGVYYFGKIHSEPVTGFAFTALNTGGHEFDDSREPMHRQEAIVNAIKKSEIQQL
Ga0315910_10000020337	F099531	N/A	MNQEKTKSSIISDLVKIQRYRSHLQNADQLFTQDMYLDVSIDELKKIHDIYTRYLLDYKHLNNPYPKVIENLEYTNEKISSCVSEHKKEAKK
Ga0315910_10000020357	F015187	AGAAGG	MKSSLLISILALLFCSCNVMKKMEDGVYIQQRTSLNKDYPQVDSILIVANGNSSTQRIMEDVMPYFTDGLKKRGVNTTSIFVSYTDRRIDESEFNKRNYTYTLWIYEQDKTLQKLDGYDHLIPLAMKLTDNRTSDNVWIATSIFNNYVKKEFYKERYAGTLMLIFRANGIIK