Scaffold Ga0315910_10000005

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000005
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006149
• Total Scaffold Genes: 898
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (14.03%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005710	Metagenome	392	Y
F005768	Metagenome / Metatranscriptome	391	Y
F005797	Metagenome / Metatranscriptome	390	Y
F012636	Metagenome / Metatranscriptome	279	Y
F018754	Metagenome	233	Y
F043995	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_10000005111	F005710	N/A	MKLSIKNPSTMKTPGQPNFYFSAYPLKVIKETDTEKRSYLHIYTRSGNKKKYAEGLKVLPMVNPYSQKDETRLEQNLNRQNRPDNVEDRDSDWFASYE
Ga0315910_10000005285	F018754	N/A	MKQFNHKIFIAAVVVGGLFVGVVKGQEARSNWVKKMKTRDERKMKGQNPKEVALDDYEIASFHNN
Ga0315910_100000053	F005797	N/A	MGKIPITTVETNTKLAESLIEDHINNMHHAEKRFEEDKGVLFENFESFTWCCEHSPVEGSIEISYVDPYNSSIKHISVPVETNFGVVCTKEKERNYKITWSYSLS
Ga0315910_10000005399	F005768	N/A	MNHTHSNPTLIHINTDNQIDYSEMYRTQETKQLNKRLRKTRNILLICAAAFVGGAVILWIMPETSFTTKNFLVYSGLAGIMVLLSMISNKQPFFSIVAALVISACFWGFEIFFSDLDGLMVESSIHKLFIISLLVWCFHSSREAELIRKELHFS
Ga0315910_10000005495	F012636	N/A	MVIILIVGIHAFNQQKQFKDIIGRWEIIGEQKDSASLEVIDSSTIILNYMGERKKITDYKIDFQKSPIWFDFSTQDTSSSIIIKSLLEIVNDSMIKWQLFLDEERTDHFSSTKGELYYLRKAKPAISTSVVSNAN
Ga0315910_10000005712	F043995	N/A	MKFFSWLGFILIVLAIIAAITSPSDTKFAEFISKDEGGDTMSCKPIIGKTTEIKLFVKLASIKYASFCESQTPLIINDKTGRKITTNYSVPKITRSETYLGLFGRFWKL