Scaffold Ga0315910_10000004

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000004
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1061031
• Total Scaffold Genes: 932
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 155 (16.63%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004644	Metagenome / Metatranscriptome	429	Y
F010981	Metagenome / Metatranscriptome	296	Y
F011412	Metagenome	291	Y
F016414	Metagenome	247	Y
F016612	Metagenome / Metatranscriptome	246	Y
F017292	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_10000004186	F011412	N/A	MKIIFPILICFCFQFSYAQRLDINALEKILDLPARSADTLLRNNKFNISDKETGKDYINYYYTSYERKDLVKHVLRSLSFMDVYAGADTSRLVLYRTYEEKEEEDLKNQLIANGYLLVSSTANNFIYKKEDYTITNKITVKTAKGTKPLMAYEFELGR
Ga0315910_10000004262	F017292	GGA	MRKILSERNIAGFLFVLVIIAFSFAHEDSKKRSLNYNVSSKYLSPDKRVPVLTANAAVKKDVVVKGN
Ga0315910_10000004373	F016414	N/A	MDKKIFIPVFLLIIIVSGFTQVKPPLKKVYGYKQASIPGILIDHSEENDIQPQGKTKPKQNYNYWFYIEFPKTEKINVTGLWISDIRYDIKTDTITDLPVRKIVFTGMANNDTTIMVPYTKNKIILVYPSGESKIDDSKYVLNLARTNELVVRYTWKNKIYYSTLKKLIELAPDVRQ
Ga0315910_10000004691	F016612	N/A	MKLTPMQRKYLLRASLILLLIAGSYLVLWSATGAHSQKQACSESMEECCKKKTDNDGSGEMIWENLSRQFISISVIE
Ga0315910_10000004834	F004644	N/A	MFFIIVISLSLFAIQSCDNDTKVKEEKKELSKTDVPVPVQTAFSAKYSTATDITWEDAHEGTKQTYKAKFTLNGKKMKAEFDTSGGFVKEEEDS
Ga0315910_10000004835	F010981	N/A	MTTNLTLDEMILQYSENPFIDDEMFARPAVQDNNQKQKILGRLLIIASNLFSKAPIKELGSYKRRFEVKYAG