Scaffold Ga0315910_10000001

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000001
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1323568
• Total Scaffold Genes: 1338
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 920 (68.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004821	Metagenome / Metatranscriptome	422	Y
F009274	Metagenome / Metatranscriptome	320	Y
F017066	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_10000001193	F017066	AGGCGG	MLPLAHHAAVAALPVFAPALIVILVLAVRYLRERRHWDDEEPAAN
Ga0315910_10000001223	F009274	AGG	MPTWIAAKAAPAIWKRIPWKMVWTVSLWLAEKGRERVRENLTQSEQTEFWNLVKKSKGRPGNLGQRDRTRMKNIVGKAIRGA
Ga0315910_10000001642	F004821	AGGA	MSKRVSQTTFISRGRLTGLVRDERPAGTGQNRTTRSANRDSGSAADDALFYRARLILGDALPRPQR