Scaffold Ga0315338_1045401

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1045401
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1744
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065114	Metagenome	128	N
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10454016	F065114	N/A	MNKQNLNLETPLLRGDSHAVMPSLGHGTGLSYRERETPESVSIGGLGCSGKVGAVVVPALQTMNKHLMPSPLNLSLYNLEYLMSIFGVSERTEVATDSASKVASGVKQKTQRLTDLTGDRYEKE
Ga0315338_10454017	F075333	AGGAG	MKKNSMRYLEGLVERGVRKHLPALKHFRYRERGIESIVNGVVPTEHEDLMVVTKTARWLTTKAPEEYIYGDMVDIDNAIASNLAQYLTDYA