Scaffold Ga0315338_1045336

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315338_1045336

Scaffold Ga0315338_1045336

Overview

Basic Information
Taxon OID	3300032138 Open in IMG/M
Scaffold ID	Ga0315338_1045336 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1746
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6953	Long. (^o)	-122.3565	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020708	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10453363	F020708	N/A	MDKNWKRFERRVALKTGGERIPVSDRRTPLDVKHPYLGIECKYRRKLSKFLTDAMAQAEAGSGKDLIPTVVLGEYNSPRMYALVNIQDLLNLLVAALGETNPPILVGEGEDDYEYDD

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