Scaffold Ga0315338_1026122

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1026122
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2606
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y
F058443	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10261224	F058443	GGAG	MRTRGQTVRLKNKSTGHEVRLLVILSDSKQGYLASDSLIDANNGDWTWYNLNEWSEIK
Ga0315338_10261225	F029468	GGAG	VTFEIRLKEQAEHEFDKFDVEDNQLKMNEACTGFVSEFIDCEGDVYYSTAMKAMNAVWQYERSVKDSAATMVGPEWDRDKGVVGKWRYPHLRKDND
Ga0315338_10261226	F024807	GAG	MTKRMLPFNLVYRDKDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLIDMDKERKPKPSAEGADTHAEAHGEMLMAQYDDDPNPYHGDYSED