Scaffold Ga0315338_1023059

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1023059
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2864
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013943	Metagenome	267	Y
F030240	Metagenome / Metatranscriptome	186	Y
F070216	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10230593	F013943	GGAG	VNILERQMMDLLNEASPTGTSGYGSGITTGDAWPDGLYTKRGERRYVGPASLTRGMQQIDFPASDNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGNSEVKANELRDDTPPLSPKQRMYGIHGFHRKQEYTIPPESANFHSTSETLVKPTTPPEGSESGGIPATPEPGSKEMGSASGYRQVQKGGESIFAGNKKLWGKWEDHRIGKKVAGREWKGGKLVDLLPKGVK
Ga0315338_10230596	F030240	AGGAG	MADAGTMFRSLPSDQRLGDYNGITKVLSSTTVAFTGSNAGAAFICEVVTNVVIHGSGGGSIPGTSLTADTLYPIGVNKVAIGASGIVYVLHR
Ga0315338_10230597	F070216	AGGAG	MKYLWILLLSIPLFGQQTFTQEEALEMIKQRDAQWEGKIEKADSLISAQKVLMADYEGLVGKLEDQTELDSLLLNAKDKQIVLLH