NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315338_1019570

Scaffold Ga0315338_1019570


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1019570 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3236
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F003706Metagenome473N
F015220Metagenome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0315338_10195705F003515AGTAGGMKKLVFSLLLLCPLVTFGSPPEGMVKQMIPFPAMCLPATVEKHHFAVLMGKLIQDYGVHISMTFSSSPFQNQRVAIIENPDTGLAGVLIITDEQTCIALSGEGRQEFIRPPDHPVGAENEAPKT
Ga0315338_10195706F003706GAGGVSEVSDVELGKLIQQISTLEVMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLGN
Ga0315338_10195707F015220N/AVVRKLNIDAKFFGAILFFIAQTCGAIWWASGLSSEVDRLAGIQGQAIPALEDEAQKCGIAIHNNEAAIKELQEHDQAISGLDVLEFKIDELRKEISSLRDVDKAIMIQHEKIFDWMASQSPMQQKGNPYD

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