Scaffold Ga0315338_1019570

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1019570
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3236
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N
F015220	Metagenome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10195705	F003515	AGTAGG	MKKLVFSLLLLCPLVTFGSPPEGMVKQMIPFPAMCLPATVEKHHFAVLMGKLIQDYGVHISMTFSSSPFQNQRVAIIENPDTGLAGVLIITDEQTCIALSGEGRQEFIRPPDHPVGAENEAPKT
Ga0315338_10195706	F003706	GAGG	VSEVSDVELGKLIQQISTLEVMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLGN
Ga0315338_10195707	F015220	N/A	VVRKLNIDAKFFGAILFFIAQTCGAIWWASGLSSEVDRLAGIQGQAIPALEDEAQKCGIAIHNNEAAIKELQEHDQAISGLDVLEFKIDELRKEISSLRDVDKAIMIQHEKIFDWMASQSPMQQKGNPYD