Scaffold Ga0315338_1019315

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1019315
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3274
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008452	Metagenome / Metatranscriptome	333	Y
F009368	Metagenome / Metatranscriptome	319	N
F009537	Metagenome / Metatranscriptome	316	N
F010426	Metagenome / Metatranscriptome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10193151	F009537	AGGA	MNVDSRVITLALFLIAQSVGAIWWASGLSSEVERLSGLVDKSDQFQTEIQKAVSGLDVLNFKVGELWKAIERLEQVDNDLRNVDNEIMVQHETIFEWLASDAEQTAKGNPYD
Ga0315338_10193157	F010426	AGGAG	MEKWKALGKRKKFMVYAGVLLVIAVVGWVSGWWSSPQPVV
Ga0315338_10193158	F008452	GGAG	MVTSLNLCSTNASGLDTSGSINNSWEKAKVRELVLVEWVDIISDDGWAVAEDCHLPTFYSVGWLEYQDDKVIKICNTLDFDDALEEHKKRDKPIGYSITCFPAGCVTSLSFLSSHNDVS
Ga0315338_10193159	F009368	N/A	IMDEILTHELVNPEELYEILEYKEKDSESIQEERIWKMFKSFLVRANRLPADVIPFSPELRGPDR