Scaffold Ga0315338_1017512

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1017512
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3529
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019729	Metagenome / Metatranscriptome	228	Y
F021556	Metagenome / Metatranscriptome	218	N
F100970	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10175123	F019729	GAG	VSHLKDINMSWSLHLWYALTLAGRLFLLSLTAVVHGLLPFIFTSKVSDGITSLDSELNK
Ga0315338_10175124	F100970	GGA	MTKIQKIILDHYKSFCDEETALRIIGNHVNNFKIFLGVVEKKLESRKPKESYDGGEEEAG
Ga0315338_10175129	F021556	AGGAG	VAKKSKFATVWTDIMSRRVEGLFDQGGTIIEVSRLMGINRSTFGRWAKSTDKEKQKFRETVEIGKEASEAWWIRQGRENLDTRGFNHGLWLMNMVNRFGWTSSHSRKEEKKEVEHKGTVEVKKKVDVDAILEKAINMGIKEMEKSIH