Scaffold Ga0315338_1016903

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1016903
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F014809	Metagenome	260	Y
F058540	Metagenome	135	Y
F090277	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10169031	F014809	N/A	MATTITRTFDATPTDKTYFSLTDNMSSSALGNIQVPQGASRISRIDCAFDTFNAKGTTIVARLLGSNMSEQNLVIWGSAGDTADAGAFQGYMSVPVAFPLAGVNNIDLQIA
Ga0315338_10169033	F058540	N/A	MDEQNRELVKPDISAPLQKRDSYLIVKEDDMTLVTVDIVEECKIHTDGGIKDGVRVTSRLVITKEYLDEDGVKQFDYHPEQEPKLKESYSTSTFYLLKDFQKASHWPKEGIFYWVWKASDGLRWEEA
Ga0315338_10169034	F005319	GAG	MSDETFAIIWILSFGLYFLIYTFWIPLKTQRRIENWLRDSESDETLLLALEVIVKRIREQTLVDFEEFMLPQARKNLQKFWSGAMGNVAKEMKNSDEGSQMSMMHNIATELSGQPWYVQALGSKLMPILAKSMEEGKEAEKVAEVGMGLLGKR
Ga0315338_10169036	F090277	N/A	VTIGIDWSSMGAGEVLSYTINVDGTGLFIEKFVITDFNAGQQPKMLEFIIPPNSTVKVQATQSANNGAVSCMLTGYKV