Scaffold Ga0315338_1008975

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1008975
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6014
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004699	Metagenome / Metatranscriptome	427	Y
F023636	Metagenome / Metatranscriptome	209	Y
F064110	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_10089751	F023636	N/A	YGLKEGGYMLYNIANTPKYKFIEEQTVKISKELGFAQEDTLQLTLSSVMGAGYKYEPIFVFKK
Ga0315338_100897510	F064110	AGGAG	MPRAKKVNSKYTIKKSASRKSAPRRKTTDRRTSNPGDVFWNKVIAGFKKLLSPAFKK
Ga0315338_10089756	F004699	GGAG	MNGAIYALRIKLSDFINDPLDHLVIDKINEINSVRTFKLQLWYDEGEVKPAELKSFIEKYESLLHYKTTIRPNRDADHAQYTWYNIIHNDDKDAKYPCRFQYEHESQWKLGGVLNGLEQFKSTLKFVISDKPSKQEKPLKRKQKRNDYED