NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315338_1007974

Scaffold Ga0315338_1007974


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1007974 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6600
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F023963Metagenome / Metatranscriptome208Y
F043628Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0315338_10079742F016597GAGMAGNHGRFPFSSTTGDSDYGLFFTPREMELFDNYNEELLGIIAQTGVTYWRIEPDTSDPNSIYGESEIKVTRDPVSIYCWVMLDEPETETNAFTVDVRRRIELYMHKDGLTERDIVPRMGDFIGYDNQYFEILRVGVPNFVYSYPQTKLGVIARCLSVREGVFDPNRDFVNKEYVGDTETPY
Ga0315338_10079743F023963GGAGMATPSNVHQKSIEFDEVNLFSIDKAVYDWFNTKHATNIQGRKVPVVFGGWERFAQMKDNKQDDNLNRMRDPAGMLILPIISIRRGDVTYNTERFIYQQADGNPRIQISKRVAMSNFDSGRRVPFDGPHIYSSDRRRSDAPVMEITTVPWPDFVNVPYTITFWASYVRHANYFNDRIWQDAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFQMTVDGYILKKTDASVVRTSSKMLMSEGVVEAAKMDTPGHHSLDEILTQDRAKAPAEYADPMPPNLGNVNSGSLNTAAPSLKDYNAEEAILNGNGNGST
Ga0315338_10079744F043628N/AMAAPSNQGLLSEAGLFIITESGNYLVTEAFVEATPTGGRAKPKEIEKDSSELWEIGASIYSINDKALKEVITVRKYITEENDIKVIIGEDVSLRKSKVINENVIVKLLSNRIKE
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