Scaffold Ga0315338_1002483

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1002483
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18206
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018085	Metagenome	237	Y
F021186	Metagenome / Metatranscriptome	220	N
F081219	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_100248323	F021186	N/A	VADYTAIRDEIKVRLETVSTFVAVFDTVPDRCPVPCAIVRPGSPVADYHEAMGGQGLSRFNFEVLALAQRWEPNAGQDVLDSFITGSDSVEAAIRGDTTLGGEASTSQVTSCTAYGNVNVADSQYVGAIFNVEVFAT
Ga0315338_10024833	F018085	AGAAG	MTTDPKLDVMAETLRAADKLVDDMHDALAEANDLYDLHPIRIRDGLPVLDHPVVGSVYVTANNTTTVIAIFDRGPGDAWWDPFGWTDTYGQRDWVPFGCGSISMYHEGGGHRRDAVLRIHLHHSLLKGWETVAEVVKEVLDREQYLELRDICHAPQDATSWGPWMTAIETGA
Ga0315338_10024836	F081219	GGAGG	VSGTYRNPLDDFEPALTRADIVAARGPDLRPVPKPAPVKRTGKPDGHGTRYRWTKGCRCSWCHAASLEHNRKTHEGQKRRKEAQRLKEAKQ