Scaffold Ga0315338_1001908

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1001908
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23117
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013310	Metagenome	272	Y
F047313	Metagenome	150	Y
F080154	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_100190812	F013310	AGGAG	MEWLSWSNAAYIVAIIVGGALTFAATKYKKVLKEIQEALNTYHEAAKDGTITDEERDKIVKEMLDIASAGVKIFWKF
Ga0315338_100190814	F047313	GAGG	MSEVEVRLRRLEQTKRHQTVASRQQPSIGEMSDGDERIVLAGGKTLRVYRKEFGKLWYIDFTGT
Ga0315338_10019087	F080154	GGA	MKDFFRGLSWVVFLLVLIVIVGVLGQLNGRDMDMYLKAQRINNG