Scaffold Ga0315338_1001552

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1001552
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28113
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (77.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015849	Metagenome / Metatranscriptome	251	Y
F020814	Metagenome / Metatranscriptome	222	Y
F049926	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_100155217	F020814	GAGG	MGRSRYNLGRRVPAHYMNPPNKALNPEWWKDEANLMRLHPSYQERKNVEKKRQQKKSNG
Ga0315338_100155222	F049926	AGTAGG	MRTPDAGTTLGKCTFCKDFIVEGNGMKAKHATVRGGHWMCGNCIMGLKDTVFKAFMDYNRESEKEKKEMMAELKQYGWSVNPDTGKLEKL
Ga0315338_100155229	F015849	AGGAG	VTGIIDNHPEESNRKQWCDLLHAAWMFHQQQVQEVRSPIIGAKPSDEEMFHMGISVAIQDAIALIQQMEAYGYFEEEDDDELPQHSRGPAG