NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315338_1001504

Scaffold Ga0315338_1001504


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1001504 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28821
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (81.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004699Metagenome / Metatranscriptome427Y
F007138Metagenome357Y
F017402Metagenome / Metatranscriptome241Y
F032816Metagenome179Y
F087741Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0315338_10015042F004699GGAGMSGAIYALRIKLSDFINDPLESSVIDKIHEVYKVHTFKLQLWYDEGEVSASGLKSFIEKYESILHYKTTIRPNRENDHAQYTWYNIIHNDDKDAKYPCRFQYEHESGWKLGGVLNGLEQFRETLKFITSPKPPKLDQPLKRKQKRNDYED
Ga0315338_100150428F087741GGAGMKITSDVVAELQKIRAAIDNVYEKLNVILYERVTAVKTTYKPINPSEKISENLSYISEKIRLIQESEVVGEE
Ga0315338_100150429F017402AGTAGMANDHAQDRYDPPGVGSDFEEQIYGDIVRGEIFRLKPLSRDKVYRKIDELNCHDIIENQTKQFDAKLKVYVKS
Ga0315338_100150433F007138GAGGMIDKTIKLAGEYPSDFKPSVSVQEVHQYFDAYSFHNGRMVGGSKTGYSTEHPDDLIVFNANVLMPGYGKVWYGDLNLTEDYLVLKDIAKSLNSTLYVLWESDGRFGLEMKPLNELFDKAVWNTDELKPTKEWYKNKMDKKYNGGK
Ga0315338_100150451F032816GAGLKNKPLDRDYFKYKDRPKKKNEAELTPCCNQSVDHKVLNVNRKEDWELIEDHIEENLRFYTSAESITPVSCKTCGRLLKYISKLKDDKSLWR
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