Scaffold Ga0315338_1001076

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1001076
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40136
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (68.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009424	Metagenome / Metatranscriptome	318	Y
F011408	Metagenome / Metatranscriptome	291	Y
F021118	Metagenome	220	Y
F044423	Metagenome	154	N
F045682	Metagenome	152	N
F097171	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_100107610	F011408	AGGA	MNFYDPTDVNVEELIKRVRIGRSTEELIRTPTGSSLISRATQDYREGLEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILNDGENAESIARHRDTGEI
Ga0315338_100107614	F009424	AGGAGG	MASKNHTASGKIPANGLSSLEDVSKETLASLALVSHGPNQMPMGVVHKSISTDRGKFSFD
Ga0315338_100107622	F021118	N/A	MIRKAEFKDVSGIMGVAKDAHKKSLSDSVPLDPKTLRNNLQVCVLSPEHFVLVLELEGKIEGAFIGVTHQLWYSKKKQASDLFFYVTEAGVGWGAKMMRRFISWSKENRGVGEIMLGISSGIGDPERTKKLYERMGAVKIGDNFILPQE
Ga0315338_100107624	F045682	GGA	MAQKEQARGMPVARGTTIPDKSPNATLFTESVEVEPEVEDGLAEPTREDEGQLDMALGAIKDFIWDEGYDEIVNRLEGSQGNLEQAIGEMAGRMVNREVTASDEGGNPMNRDLLYALGGEVVNELYNVAEREGIYKKRDDRGDKEAQEESLIYATQKYVDMGDDKIDPSGSMKLAANALRGQYPPEQATPRMGMPVEEEMIDMEAV
Ga0315338_100107639	F097171	N/A	MLTFPEKKEHVLNVLLRAETLSPTEKLVAVAMVFKIGDNGVVDLRMKEIAELSSLSVRGLREVLKRLQAKNIFDTRYHEAKKTYYFAMWRML
Ga0315338_100107644	F044423	GGAG	LRKNSKENFKSLTTQSSRIFDNPRRSWEDMCFALAGMDRLIARYARLKYAGEYSHYPDIANHVYWEIVKIGKAQGWKHRPRWSRPSSMPMDVRGFFAYRLAELALQENVGSDRCRRCNGRGTIHTGFKSMDCFSCEGSGVLKKTELYRAKFMGVSEVMWHKQWKYRFRQHILGIFDVFEFEISKELDRRL