Scaffold Ga0316201_11469934

Overview

Basic Information

• Taxon OID: 3300032136
• Scaffold ID: Ga0316201_11469934
• Source Dataset Name: Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 565
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7869
  • Long. (^o): -75.1074
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316201_114699341	F002399	GGAGG	MASKYRSQKSIIGKMKRKYGLKDNVELKKAEIAMTPDDWKIFSEALTFPNGKPSKREDK
Ga0316201_114699342	F004603	N/A	MIFSININGNIIDWCYNLDCQDKQFHRTWIPKLRDIQIITKDLGDLTVSEVKKIILEDIQPDIQMVRDHNNKVARE