Scaffold Ga0316201_10325348

Overview

Basic Information

• Taxon OID: 3300032136
• Scaffold ID: Ga0316201_10325348
• Source Dataset Name: Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1329
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7869
  • Long. (^o): -75.1074
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014252	Metagenome	264	Y
F077986	Metagenome / Metatranscriptome	117	Y
F095399	Metagenome / Metatranscriptome	105	N
F095403	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316201_103253481	F095399	N/A	HLNNFTMKRKHAMSRWFRKLAHKRYIDRYINELRWDSLNAMITASRTEWNEPVIKLLDNNAHLIRKYERRRRWVKF
Ga0316201_103253483	F095403	GAG	MSENHKLRSVYFLATPKQVDQLIEHGYSIIRNVKHKVYEVRVTDQQQFIRIAEEFDVHTTMSEDAPKGNIEIETTIAGVDFKGVLDKLDRL
Ga0316201_103253484	F077986	N/A	MKEGTLVWIVASVENDAFQANCDENEIAVEPHGYKAMPLYTDKQWVKSLTQEEIEEYNKS
Ga0316201_103253485	F014252	N/A	MNEQEKATKILFYLLVFTIAMFALSVLALVYVYVHPTISLQ