Scaffold Ga0316201_10166090

Overview

Basic Information

• Taxon OID: 3300032136
• Scaffold ID: Ga0316201_10166090
• Source Dataset Name: Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1923
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7869
  • Long. (^o): -75.1074
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048332	Metagenome / Metatranscriptome	148	N
F063454	Metagenome / Metatranscriptome	129	Y
F086331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316201_101660902	F063454	GGA	LKQLELNLKIKGTSHFDDVPTLKQLIDRKKKRPKHLTYLSDKHFQELQYIYRGRL
Ga0316201_101660906	F048332	N/A	LGFILTTLQNLEMNYLKGGNMEILKSIKLRQLRKERDLIQANKKAWINLHRKDNLDASISRTFLAYQRAINKINYAIRNLQND
Ga0316201_101660907	F086331	N/A	QEQLLQNIEKAENLLNNRRWIKQQTKFWIGVYINHLAKLRNELLKRG