Scaffold Ga0316201_10135772

Overview

Basic Information

• Taxon OID: 3300032136
• Scaffold ID: Ga0316201_10135772
• Source Dataset Name: Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2144
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7869
  • Long. (^o): -75.1074
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F047975	Metagenome / Metatranscriptome	149	Y
F059441	Metagenome	134	N
F066266	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316201_101357723	F066266	AGGAGG	MSILNEHELEKKIVSTIKYRIQEALAYRTYDSKTNKSCHQDYRKTIRDAKDFDELKKIMSEFVDDLMHI
Ga0316201_101357724	F047975	AGGAG	MINMTKEEWAENTVDDMDWKDLARIAYDVMLDSVKDMSDKDFQEYLIECGYEED
Ga0316201_101357726	F010571	AGGAGG	MSNITTETYADKLYEELYDKHYREVGKTTDDVDYIEREAERLALIDLDNFEMEG
Ga0316201_101357727	F059441	GGAGG	MKTWSSTITYTVFDMGRDCETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE
Ga0316201_101357728	F003976	GGAGG	MSRLYNDYYFEKEDVLDTLDKLEMSVRFLNVWVNEPMGLENARYVLEKNANQEFNWFSRDMVKELVEEETYG