Scaffold Ga0315339_1099230

Overview

Basic Information

• Taxon OID: 3300032134
• Scaffold ID: Ga0315339_1099230
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 935
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.1202
  • Long. (^o): -123.4856
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F042567	Metagenome	158	Y
F058443	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315339_10992301	F058443	N/A	VRLKNKSTGHEVRLLVVLSDSKQGYLASDSLSKVKEGNWAWYNLNEWSEIK
Ga0315339_10992302	F042567	GGAG	VTKEVKEVKEVKSGRRLKTNEEKAKDQKALADGYNRLIGAVDNFFEHYGHCEGDYGDIGMRHYDRLKEAHDRLIMPKQRMGETHIVEDWSELTDEERKTSSSKYWYEND
Ga0315339_10992303	F024807	GAG	MRSVKPHLQNTGTKMTKRMLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLLDMDKERKPQRSAEGVDHGKPQPSAEGADTHAEVHGEMLMAQYDDDPNPYHGDYSED