Scaffold Ga0315339_1025706

Overview

Basic Information

• Taxon OID: 3300032134
• Scaffold ID: Ga0315339_1025706
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2546
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.1202
  • Long. (^o): -123.4856
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020443	Metagenome	224	Y
F032047	Metagenome	181	Y
F100973	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315339_10257062	F032047	N/A	METDAAEEALRAFGAQSGLAVLVEQYVWYFVVAFALLFLKDSVTNALAGISLFFGSDYDENMVCHIHTNGNRRPARISKTTLFSTSFYLYDVKHNKTIDEEGNEVIERVVGSATLLRVPNSELKSLRIERPLDNLDLTKE
Ga0315339_10257063	F100973	AGGAG	MAPRPPRDPHKVGSFSELRSHYKQLWKELDECKMMKGMTTEVLRTTSAEVRGAKAEAKKARGQVVALTKREHAKSKEKSAAAYATTAATTLIIGYQIVEVSGGWGKWAPVFEHEATIGVLQVIIGSILAFAMRPLQ
Ga0315339_10257064	F020443	GAGG	MKDLKINLGIGKTEISKTGKGAVVGGVGAFTYSLLSGMDVMPAAFTAPDVVPYVVAGLAAVINFVR