Scaffold Ga0315339

Basic Information
Taxon OID	3300032134 Open in IMG/M
Scaffold ID	Ga0315339_1000804 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032134 Open in IMG/M

Scaffold ID

Ga0315339_1000804 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33691
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (69.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33691

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (69.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.1202	Long. (^o)	-123.4856	Alt. (m)	Depth (m)	200
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.1202

Long. (^o)

-123.4856

Alt. (m)

Depth (m)

200

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035492	Metagenome	172	N
F040340	Metagenome / Metatranscriptome	162	Y
F046652	Metagenome / Metatranscriptome	151	Y
F048573	Metagenome	148	Y
F077816	Metagenome	117	N
F089036	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315339_100080426	F048573	GGAG	MPRMRECPTCGSKLKKENYHKRIEKMRLSRDKLTLSLIDDVFESISKYFPIDDLDKFSFLKNIEDAKDVVVRNTIRQYIQEKFHKRGLNIKYLIGMIKTGHSTYGLNKEYERKSLDRIPPKID
Ga0315339_100080433	F035492	AGGAG	MADVGAILESKNSQDSWYDPKQDFSGPMPEGEYKAHVKSLNIKRNVVVKGKFLSDIYEVIFTVADENSDMEYQDDKGEALSGATFVGRDFRSKGFFRFKKPSKSEYPKLSENMGSNRSYMELVNSFGLSMEEVDGKFYLPELDSSDIEGLPVIAKLYHDTWVNSDGEEKITPKASAIFSWEEGEKKEEDLPF
Ga0315339_100080438	F077816	AGGAG	MKKKKKAVFVGIADKIQIKSKSYVMKMLYKRAKKNPFMADKSYEEYLEYIKSQVKLLEGIEIKADTEEEMYNALKSLGWLKEISVLAVYIITANYGIA
Ga0315339_10008046	F089036	AGGA	VKKIDLQGAILAGVGTLIIGLTGWLMTTTLGVDKDQDVMEVRLDHAEENYDKLRLDSPNHSMDTCPVCMHMKLGYK
Ga0315339_10008047	F040340	GGA	MYAYEVRIQVTWFYLHCVIAVVVLIADARGTLEPAITKWEKKLGIPVPEEIVKEVEQRND
Ga0315339_10008049	F046652	N/A	MKHQIATTQNSSLIDKAIVSAMMIESIIIAFSIRDDMFLSVAIGALVVIGLRATKKVIDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315339_1000804

Overview

Ecosystem & Geography

Associated Families

Sequences