Scaffold Ga0315336_1048033

Overview

Basic Information

• Taxon OID: 3300032132
• Scaffold ID: Ga0315336_1048033
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2263
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7507
  • Long. (^o): -122.0138
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315336_10480332	F016734	N/A	MNKRQKQHYDKQLDKMNLTDSQRDSFDHDPKRSLVDLEKYQSTDTFSLQGFKLSKVLDDIVLAQFVDLSNDGKSVMRNGIHIPLAQVQRTWRLAKVILIGPKVEYTTVGDIICFPDDKGIKVDNMSIKGYDESLRDCIFINEERFFGICEELEDHDNELS
Ga0315336_10480333	F036473	AGAAG	MITSLASLKATLLDKVCEVKFARRSPKPGRPATRRMLCTNNVQLLNSVEGRVVLNYAPPRQGLKYNPNQENLIITWDILMQDYRTINCDTVDLISTLEADQTFWTYLNEKIVPMSVGQKLDFMNT