NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315336_1006592

Scaffold Ga0315336_1006592


Overview

Basic Information
Taxon OID3300032132 Open in IMG/M
Scaffold IDGa0315336_1006592 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11764
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7507Long. (o)-122.0138Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005649Metagenome / Metatranscriptome394Y
F012920Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0315336_100659222F012920GAGMRKLFKEIREIKRKMSLPLKREGSRGMLISPGFTEREKELMIEMLIRRSKRHPIKGPGHIFAPMQMHKNRLKRGEGHNEKGQFSKSTQNKAMNLIREGKWII
Ga0315336_10065925F005649AGGMLFDNRVQQSLSKTREKRLTNLNSDKSLQGLVIDWQFANTERMFDTYVEPEMEYQPTYAY

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