Scaffold Ga0315336_1003213

Overview

Basic Information

• Taxon OID: 3300032132
• Scaffold ID: Ga0315336_1003213
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22418
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7507
  • Long. (^o): -122.0138
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F060360	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315336_100321323	F003898	GGA	MDSLKVTGISTSLGLVYWTDIISGVLMCVMFTAQIYYLYLKTKKIKEQ
Ga0315336_100321329	F060360	AGAAGG	MPQLFLENPKQVTTPAVNDPVHLANIEEGKATQIVPLLFYDVYQDIALELPEQPNISIVKAEVNKVIRRVNDEIGLWRQLITVSPSTFNTSIDLMSTTVIQSETTDEIEDYGRFNHGWDYFSTDNRLRLDDTVIEVEEVYLDNEEWEQVTYAKVKDSNNSTEKYWAQIGRFIFFPKDLSTSSEIIRLRVKKSYSFIENVVGKDAIIDLPESYRQLLISGVLYSLTARPKYKDPDIFGVNKEVFDMELSSLKRQYANLEATYMSRDMTYKY