Scaffold Ga0315336_1001615

Overview

Basic Information

• Taxon OID: 3300032132
• Scaffold ID: Ga0315336_1001615
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41478
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (96.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7507
  • Long. (^o): -122.0138
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F006447	Metagenome / Metatranscriptome	373	Y
F007978	Metagenome / Metatranscriptome	341	Y
F039340	Metagenome	164	Y
F075975	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315336_100161516	F007978	GGAGG	MAITFTTDKLQGLPSAVAGVYGRIQSVTVKKYDTDPVSWSCLYDVVLHASAAVRNAAGEYPEWGNRLHSPHIDHFTCTYDPTSNSNPYAQAYADLKTKIASIASSIADA
Ga0315336_100161517	F075975	AGGAG	MPDMGPYMAEKYTKMIEGITNDLGRTADKLAFAQNILRALKNPDMLVDGAPLTLERLQVMENGDIRTLPPPPDMTCIEEVTKEFGKNGKKEKEAVLASDPA
Ga0315336_100161518	F001034	AGGA	VTLLSIGTYEDAQYQNDAPIGPQEPIPTGVHSIELSWDRSRGYMRVIIGGKTWWFKEYLGKAVVVGTDNGRGRITLRAMSRLDGETLTMYRPPEAPAHGMVEGLERKRTHNRLCYRRSSQDWRLRDERLPWNDPDALKFVTTYVGDLSAEWNGLDKIAHIYHNGTAVIDDQHICHLYDPDLSYG
Ga0315336_100161520	F006447	GGA	MTLFEKICRMIGDRRIPSPKMPAFKLWRVGFANRHVTTVVVMAIVVSAAAVTVGLYFAIKDVASSTYNWPEPAQYAVTAAGLETMGKKNEDYPDGTESQTLSIRLADGARISTLRIKDTDLGRTGISRALDISPLTNAVTGATAYLWVGNLTVTNSSFPTFKMETSDVANLITGLLCDGHTMAATITNTVPDMVLESERLSSVYEVDGSVVDRIQIHITGTSGAFVENLILDNVDAWNGEAYFSRLKVGNLTINNSNKVGDGSGVDSASCQFEPNVAARNITNTIQDRPIKVQ
Ga0315336_100161540	F039340	AGGAGG	MLRPGYLIDNHKRLVERLHIILDEAVKEYDHDEDVVDDFTQYVKDWATRREEATWQG