Scaffold Ga0315305_1061296

Overview

Basic Information

• Taxon OID: 3300032127
• Scaffold ID: Ga0315305_1061296
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_Tmax_529 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 987
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 370

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001712	Metagenome / Metatranscriptome	648	Y
F002529	Metagenome / Metatranscriptome	551	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315305_10612961	F001712	N/A	RKRARTRTVTRRRRLPSRKKVSKSIGSQWGKISKGAGVLAFLSNVTGSDMAASAGQPIGARAMNFGNSLLGRISGYTPFKNATGANITQTVGIDGIFNKWSGIGAASLLYGMLPIRKLPHKGKASTLGKSLLTAGILSGIFMPTNNRSSNLISSSPAMTVSTSEVSYT
Ga0315305_10612962	F002529	GAGG	MTYGFDDVTFTSIGTGVAETQLNSGTSLSAPDPAHAFNAVIPYQMELGAFSTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAVPALLAYPINTPLAGGEHLNFYGQALVANTVAPGVGATVIYDTDSTNGSEQYYTRPTNENAASTTINTRTQ