Scaffold Ga0315305_1037362

Overview

Basic Information

• Taxon OID: 3300032127
• Scaffold ID: Ga0315305_1037362
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_Tmax_529 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 370

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F067823	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315305_10373623	F013820	AGGAGG	MIPTIIGFIDKLWPGGKTYALMGLGVLMTVCQMGGWHNFSPEAWGLLGIGGAATWKMGADRGKPAVKK
Ga0315305_10373624	F022754	N/A	MNELIITIMLVIPSPHKLVNWSVNQIPTQIQITYETGLEVSYSATPVSCSFRPRHAKEMVFRSPNNRCYSVYDLSSPRFVRHPDYWYKVELPKPPLVNLGE
Ga0315305_10373625	F067823	AGGAG	MDIAAMFEGQGWFAIAGQIVLIFTAVTGALPDKFVQKIPVLGTVWPIFNWLAGNVFNNI