NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307415_100353524

Scaffold Ga0307415_100353524


Overview

Basic Information
Taxon OID3300032126 Open in IMG/M
Scaffold IDGa0307415_100353524 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1238
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027428Metagenome194Y
F098001Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307415_1003535241F098001GGALVRIGEPPFLLKTEGDGKMGSLSVYKVVIESSDGQETFQKDYIGPATSDDDAVRRALSAFKKRADDRVLSVELVDQDSWVEDVAALPPDGEEWVPL
Ga0307415_1003535242F027428N/AMLRLVAAILLIGGPILAISFRSWGLGSMVFGPEAIVLGIRQVRLGEYRGERFIGVALLLGGAFTAIEGLVRLWFEAAP

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