NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316040_103506

Scaffold Ga0316040_103506


Overview

Basic Information
Taxon OID3300032121 Open in IMG/M
Scaffold IDGa0316040_103506 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSA3 metaT (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086415Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0316040_1035061F086415GAGMPSIEQEPLPRNALSSARLRSSPASRLGHRDSGSRRLFTPREPLRTLEGPGPRPRAPLPTGDTLLWTSASLADFCNLKQRAGTPNERSILTREWSFRPATRRHQPMPVALARDTLPHRGPASLDLHAPACARRVPLAWTGQIEGRSVRVKASRALLDDVARALLVAPRAPGSPARSVMRPGGPHHSSCRPRLLFDAAPRRATPSKEPGCLLPHRNPYASGGWLLRARLDRGLVTPPP
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