NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10629449

Scaffold Ga0315277_10629449


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10629449 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F013755Metagenome / Metatranscriptome268Y
F016253Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_106294491F016253N/AKPRCDKIKSFIDCGTGVYSISRKEAGEIHKAAKKMKNYAFSYWTRNRKNKEAK
Ga0315277_106294493F013755AGGAGGVSDHIGDTNKMISDTPISDSTPHNVGDLAMLCRRFERFAAGRQAYIQQLEAENDALRADLLLWNDKEVK
Ga0315277_106294494F001259AGGAGGMKDSFAFVYVHAFNGIVRVESLDTARFIDGNPEWKHVATINPHVVLESILRAKGKERNLIIKHLLS

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