NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315277_10601218

Scaffold Ga0315277_10601218


Overview

Basic Information
Taxon OID3300032118 Open in IMG/M
Scaffold IDGa0315277_10601218 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1079
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041844Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0315277_106012181F041844N/AFMLNLLLMAEIILPIILIIILGFFAWRLIRKKWIHRIFANLVYKKNPFVSDFYEQVGHSVEEKGNKVVKPVSYIALILCVALIFKILWPYIFRPGHSANLFLEGGLPLTFLYMGLVFVGLGVSASVISSLLFIKETKKFDVYNRSIEIYLLSKYFEDILQITLGIALVVGTVYLWFFVLDLSVPVFRYLESSSASFGEPRVNFEEMLKLWRILIISFRDQFQTWCITSFLISLASLTIPYLWFKGRRFTKIFLALFFSGTIFSYFASFLIKKLIISELTWIFVAVWTFSALITSMVFHLINTIWLNKIGICRRCQAENSIHSKYCTECGHKLILLPKENRAGA
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