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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032118 Open in IMG/M |
| Scaffold ID | Ga0315277_10030074 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6483 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5099 | Long. (o) | -110.3566 | Alt. (m) | Depth (m) | 103 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001538 | Metagenome / Metatranscriptome | 674 | Y |
| F004432 | Metagenome / Metatranscriptome | 438 | Y |
| F091589 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315277_100300746 | F004432 | GGA | MVTAKKAPAKAPAKVAPVKRRTPKPQAEQTINVSVAAPASAPSAPSAPKPEAKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITTQDKMPQLAKQENLLTPARSLMKDVDGLVVLVHKANLATNSRTTVLALNADGSREKSMEGTVTSLFNASADRNSAMVAMLNGEVLCEEFNQSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKEKPEDIAALKTRINLASTDMSEE |
| Ga0315277_100300747 | F001538 | N/A | MSVDTISLFPKVAASGYPDRHDLAQAKLEKQHEMNKTNEIAKQKQTELQDIGFEIYCKKVVQERLRMEIFTNRKLDIYV |
| Ga0315277_100300749 | F091589 | N/A | MTTEIDYKGAKLVGAPLSPLAEGEKRISVLQQPTSYSPIAETARAFGQGLTFGTLDEIEAAFRTGSISGPEYERQRNQLREQQKQFGEDVPLVKTPVELVGSLIAPLGIAKQVAKLAPATQALITGQTVPGQIARGTAIGAATGAASGYGFAEKDEGSEAVIGGAFGGVLGGSVPIVVKGAGTLIKNVLNSAGIGDQEAAASKMLANYLKKDNLSPTEAQQALDELRRIGIPNPVIADLGKSLNDLAYSAYVVQSKLKGATKDFLENRLIDQPNDIVKGLVEKAGLAKNVNGFEYLEALAANQSRLASQAYPLAYSKDIDARPFRQYVDRDLFKNAYANAVKTADAQGKKLPPLESIRNAQSVPTEILHEIKIGLDQVIDSNTDALTGKMTKYGATVVKVKDEFNDLIKSLNNDYKKANEEFADSSRIRKAFKMGEDYQTLNPAEAASNIKKLTSDEKEAFRLGVMADVNQRLGDYKSGDFTKQIFKSENQKLLLRNAFTDTVDANGKVKSAQDSYTEFSQYIKGLNRQAETKQRVLAGSRTDENQAVREQANLLGSLAQAAVTSDPISMLRAGGSVLMSRARGISSESSEALQKRLFSVDPVEQTAILRELNKRAQKPKTGLLTGAAAVGSATGILGD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |